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KMID : 0381120120340040415
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Genes and Genomics
2012 Volume.34 No. 4 p.415 ~ p.422
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UbC gene allele frequency in Korean population and novel UbC mosaic repeat unit formation
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Kim Ryong-Nam
Kang A-Ram
Choi Sang-Haeng
Kim Dae-Soo
Kim Dong-Wook
Nam Seong-Hyeuk
Kim Ae-Ri
Park Kun-Hyang
Yoon Byoung-Ha
Lee Kang-Seon
Park Hong-Seog
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Abstract
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The genomic structural organization of human UbC CDS repeat units could be representative of concerted evolution. The structure of the UbC gene and its repeat unit number frequency at scales of different human ethnic populations remain to be sufficiently determined. In this study, we performed comparative analysis of UbC CDS regions in genomes from 140 Korean individuals. We found that the UbC gene allele types 9, 8 and 7 are present in the Korean population in proportions of 97.1%, 0.4% and 2.5%, respectively. Interestingly, we discovered that the allele types 7 and 8 harbor the novel UbC gene mosaic repeat units 3∧5 (combined between sequence parts derived from standard repeat units 3 and 5) and 8∧9 (combined between sequence parts derived from standard repeat units 8 and 9) within their sequence structures, respectively. Our analysis showed that the novel mosaic repeat unit 3^5 lacks the highly human-specific amino acid S38, implying a functional consequence. These results suggest that the genomic organization of UbC repeat units is still undergoing dynamic structural changes due to concerted evolution through unequal crossing-over. Our results could represent valuable data for future investigations related to treating genetic diseases caused by UbC gene mutations and variations.
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KEYWORD
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Novel UbC mosaic repeat unit, UbC gene allele frequency, Korean population
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